DNA Damage Atlas


GSM6573570-PEM-seq_HEK293T_CasMINI_CLIC4




Basic Information

Manual

Sample ID:   

SRR21530176


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-CasMINI plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

CLIC4 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX409374514093793240937620629112+
chr922746746227478232274765247331.6-
chr1568132248681326326813238333893.7+
chr1149932260499324674993246715718.8-
chr1345983898459841054598409815718.8-
chr1376956526769567367695673615494.3-
chr115043665115043686315043685115348.1-
chr313196081613196103113196101615133.9-
chr1014086879140870801408707910792-
chr1128560592285607932856079210792-
Download the Full Peak List



Motif Analysis

Manual





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