DNA Damage Atlas


GSM6573574-PEM-seq_HEK293T_Un1Cas12f1_CLIC4




Basic Information

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Sample ID:   

SRR21530172


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-Un1Cas12f1 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

CLIC4 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX40937449409379354093762283540.5+
chr1176018331760191437601875229452.5+
chr1568132261681327856813238324412.2+
chr922747297227479372274765113904.3-
chr1166661701666619026666170111068.1+
chr118526688218526708718526708710852.2-
chr12372180623722007237220078301.1-
chr62781928027819481278192808301.1+
chr157049867770498879704988798260-
chr141033592201033594231033592208219.31+
Download the Full Peak List



Motif Analysis

Manual





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