DNA Damage Atlas


GSM6573577-PEM-seq_HEK293T_PlmCas12e-R1-v2_CLIC4




Basic Information

Manual

Sample ID:   

SRR21530169


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-PlmCas12e-R1-v2 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

CLIC4 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX409376124093793340937616171084+
chr922747139227480592274768417819+
chr858390536583907405839053612054+
chr156813228468132665681324658605.48+
chr101116974181116976191116976188155.94-
chr139192146391921664919214638155.94+
chr175109253510945451092538155.94+
chr41003239861003241871003239868155.94+
chr163385472338567433854728115.57+
chr195579844558004655798448115.57+
Download the Full Peak List



Motif Analysis

Manual





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