DNA Damage Atlas

GSM6573578-PEM-seq_HEK293T_LbCas12a_LNX1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR21530168


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-LbCas12a plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

LNX1 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1568132241681327486813238214058.4+
chr75606164556062060560618529446.2-
chr177063870870638918706389188485.22-
chr11173419951173421971173419955292.76+
chr176520455652065965204555240.87+
chr51305814651305816691305816695240.87-
chr41279212001279214101279214105091.13-
chr51239099591239101691239101595091.13-
chr149642295596423156964231553546.06-
chr176171147461711675617114743546.06+
Download the Full Peak List


Visualization

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Motif Analysis

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