DNA Damage Atlas


GSM6573579-PEM-seq_HEK293T_SpCas9_LNX1




Basic Information

Manual

Sample ID:   

SRR21530167


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-SpCas9 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

LNX1 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr756061056560624685606185267689-
chr1568132229681327976813238314158.6+
chr47814013178140534781403335372.63-
chr31419726614197849141974734774.94+
chr12377984832377986872377986834548.68-
chr11733203517332236173322353077.71-
chr12324217392324219402324219393077.71-
chr197086037088047088033077.71-
chr204970627449706475497062743077.71+
chr212573436825734569257345683077.71-
Download the Full Peak List



Motif Analysis

Manual





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