DNA Damage Atlas

GSM6573580-PEM-seq_HEK293T_CasMINI_LNX1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR21530166


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-CasMINI plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

LNX1 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1568132235681328026813263237904.4-
chr1745404784454049894540498924667.8-
chr120003151200033532000315118775.6+
chr1647208788472089894720878812579.3+
chr219274104819274124919274104812579.3+
chr2237658948376591493765894812579.3+
chr672886996728871977288719612579.3-
chr1467811466678116686781166612517.1-
chr1958608716586089185860871612517.1+
chr222203114922203135122203114912517.1+
Download the Full Peak List


Visualization

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Motif Analysis

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