DNA Damage Atlas


GSM6573581-PEM-seq_HEK293T_AsCas12a_LNX1




Basic Information

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Sample ID:   

SRR21530165


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-AsCas12a plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

LNX1 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1568132234681327336813238223231.3+
chr214737275247372953473727529106.39+
chr42882971428829916288297149061.31+
chr37642095764234276420957410.46+
chr101150969381150971391150969386070.93+
chr105287052752870728528707276070.93-
chr222906556129065762290655616070.93+
chr23310920233109403331092026070.93+
chr45880156658801767588015666070.93+
chr49436585994366060943660596070.93-
Download the Full Peak List



Motif Analysis

Manual





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