DNA Damage Atlas


GSM6573582-PEM-seq_HEK293T_CasMINI-ge4.1_LNX1




Basic Information

Manual

Sample ID:   

SRR21530164


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-CasMINI-ge4.1 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

LNX1 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1739159177391593803915938050915.8-
chr770354832703550337035483238566.9+
chr1385710386857105898571038638186.9+
chr778223892782240977822389737814.3+
chr1320718698207189082071869836914+
chr1568132411681327486813241130670.4+
chr1112013240512013260612013240525711.2+
chr1249686534496867354968673425711.2-
chr1619134317191345181913431725711.2+
chr1891746819174882917488125711.2-
Download the Full Peak List



Motif Analysis

Manual





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