DNA Damage Atlas

GSM6573596-PEM-seq_HEK293T_control_FGF18

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR21530150


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Genotype:   

WT


Harvested Time:   

3days


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr116581071216581091916581071447246.1+
chr1079337102793373687933710236766.7+
chr1310069365210069385310069385236492.4-
chr1632760603276261327626136492.4-
chr1290894786908949909089479035955.7+
chr121003942421003962521003942424328.2+
chr685008737850089388500873724328.2+
chr710895730010895750110895750024328.2-
chr614972048149722521497224823970.5-
chr312560920212560940812560920223737.7+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab