DNA Damage Atlas


GSM6573601-PEM-seq_HEK293T_AsCas12a_P2RX5-TAX1BP3




Basic Information

Manual

Sample ID:   

SRR21530145


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-AsCas12a plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

P2RX5-TAX1BP3 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1013374971013374993813374991518351.3-
chr855003770550040095500378916160+
chr1568132226681327896813238213720.2+
chr2233837139338373523383734912088.4-
chr1162499799625000206249981011650.8+
chr76767702567677235676770319195.83+
chr134578577745785997457859778777.83-
chr136784301767843230678432177555.26-
chr11122195161122197171122197166405.05-
chrX1188647061188649081188649086373.34-
Download the Full Peak List



Motif Analysis

Manual





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