DNA Damage Atlas


GSM6573608-PEM-seq_HEK293T_LbCas12a_KLHL29




Basic Information

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Sample ID:   

SRR21530138


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-LbCas12a plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

KLHL29 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr17782933917829528578294521103716+
chr1568132215681327676813238221513.2+
chr212185029312185049412185049412308.6-
chrX10557683210557704110557684011837.4+
chr31108627721108629751108629759749.84-
chr205333312153333326533333219654.72-
chr67807280278073006780728027276.54+
chrX1368802671368804711368804717276.54-
chr101042540741042542791042542797241.04-
chr51421447714214683142146837205.89-
Download the Full Peak List



Motif Analysis

Manual





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