DNA Damage Atlas

GSM6595791-embryo_0min_biol_rep2

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR21661165


Source Project ID:   

GSE213884

Cell Type:   

Embryo


Organism:   

Oscheius tipulae


Strain:   

CEW1


Genotype:   

WT


Harvested Time:   

0min


Targeted break:   

FseI


Spike-in Intensity:   

no spike in


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq6000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chromosomeI82944308294435/846.593/
chromosomeIV25027162502721/799.56/
chromosomeII30568753056880/752.527/
chromosomeI793653793658/705.494/
chromosomeI58658885865893/564.395/
chromosomeV38489243848929/564.395/
chromosomeII76923597692364/517.362/
chromosomeIII12381361238141/517.362/
chromosomeX80214388021443/517.362/
chromosomeIV601386601391/470.329/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chromosomeIII12381361238141/85511.7/
chromosomeV38489243848929/75965.7/
chromosomeII50566395056644/68366.6/
chromosomeIII34684913468496/59575/
chromosomeIII91904039190408/51175.5/
chromosomeIV41508424150847/46405.6/
chromosomeIII71010427101047/45531.8/
chromosomeV43472234347228/43557.7/
chromosomeI11760131176018/41445.9/
chromosomeII30568753056880/39136.1/
Download the Full Merged Peak List


Visualization

Manual





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