DNA Damage Atlas

GSM6597245-2nd_Activated_T

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR21678389


Source Project ID:   

GSE202887

Cell Type:   

Spleen


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

activated by a-CD3/CD28, a-IFNg, and a-IL-4


Genotype:   

HH7-tg Cas9 CD45.1


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr944045809440476054404661056142.1+
chr1941342417413426214134262130560.9-
chr1160112196011613601145113080.7-
chr1160061246006497600634110920-
chr126936103369361632693614628603.98-
chr21636429881636433751636432007517.81-
chr126915914469159706691593146655.96+
chr157655975676560129765598885571.42+
chr157656624276566602765664485541.7-
chr66951627369516670695163804815.84+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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