DNA Damage Atlas


GSM6597247-2nd_Eff_3weeks_6




Basic Information

Manual

Sample ID:   

SRR21678396


Source Project ID:   

GSE202887

Cell Type:   

Intestine


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

activated by a-CD3/CD28, a-IFNg, and a-IL-4


Genotype:   

Rag1-/- NM


Harvested Time:   

3weeks


Targeted break:   

pST-sgRNA


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr118485134518485154918485154955620.9-
chr216761665016761685516761685555349.6-
chr1711265194112654011126519451929.8+
chr944046480440470424404661042504.9+
chr1610947035109472391094703539520.1+
chr1579014135790143387901433835302.1-
chr232721444327216463272164632520.4-
chr192614829926150349261503426218.2-
chr263466141634663476346634624641.5-
chr1578881977788821807888218023534.7-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9440464934404704244046610107556+
chr116006265600647160062926806.23+
chr116011252601157960114535040.21-
chr118889011988890322888902623546.87+
chr167614326776143470761433903264.69+
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab