DNA Damage Atlas


GSM6597250-2nd_Eff_2months_9




Basic Information

Manual

Sample ID:   

SRR21678393


Source Project ID:   

GSE202887

Cell Type:   

Intestine


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

activated by a-CD3/CD28, a-IFNg, and a-IL-4


Genotype:   

Rag1-/- NM


Harvested Time:   

2months


Targeted break:   

pST-sgRNA


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11796788217967903079678821515381+
chr944046443440475444404742988579-
chr1748646602486468034864660272418.1+
chr293398279340029934002764853.6-
chr1269159214691595796915935027915.7+
chrX14464583714464604014464583721511.4+
chr580163527801637318016352721405.9+
chrX75510177551221755122121405.9-
chr119193415919193436419193415921301.5+
chr1398994504989947099899470421301.5-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr944046452440475444404742989807.4-
chr77078146707834670783416212.83-
Download the Full Merged Peak List



Motif Analysis

Manual





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