DNA Damage Atlas


GSM6597253-4th_Eff_Female_1




Basic Information

Manual

Sample ID:   

SRR21678390


Source Project ID:   

GSE202887

Cell Type:   

Intestine


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

activated by a-CD3/CD28, a-IFNg, and a-IL-4


Genotype:   

Rag1-/- NM


Targeted break:   

pST-sgRNA


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr7101212813101213019101212813990099+
chr8109608639109608848109608848435833-
chr17248966422489687724896663265431+
chr4128931140128931345128931140178701+
chr944046525440469264404661086417.6+
chr514235762814235783314235783353127.3-
chr345040782450409854504098543896-
chr112554670012554690312554690339018.7-
chr117960191117960211217960191234481.1+
chr192179939218199921799433644.1+
Download the Full Peak List



Motif Analysis

Manual





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