DNA Damage Atlas


GSM6597256-4th_Eff_Female_4




Basic Information

Manual

Sample ID:   

SRR21678386


Source Project ID:   

GSE202887

Cell Type:   

Intestine


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

activated by a-CD3/CD28, a-IFNg, and a-IL-4


Genotype:   

Rag1-/- NM


Targeted break:   

pST-sgRNA


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr7790811747908137979081174465385+
chr4585543355855454058554335214009+
chr1162294482162294687162294482135879+
chr1389819959898201728981995952310.1+
chr944046443440469844404673041190.6-
chr715107514151077191510771937366.7-
chr1269361217693614626936146236950.7-
chr1160061286006465600633930996.1-
chr714746035147462401474624030572.7-
chr1160112366011573601143628929.7-
Download the Full Peak List



Motif Analysis

Manual





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