DNA Damage Atlas


GSM6597258-4th_Eff_Male_2




Basic Information

Manual

Sample ID:   

SRR21678384


Source Project ID:   

GSE202887

Cell Type:   

Intestine


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

activated by a-CD3/CD28, a-IFNg, and a-IL-4


Genotype:   

Rag1-/- NM


Targeted break:   

pST-sgRNA


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3887070898870729988707089817718+
chrX143776972143777175143776972232757+
chr13492297224922993049229722161048+
chr11767686117676881576768815124450-
chr9440464634404758944046667105219-
chr2120653973120654182120653973104602+
chr1874804443748046487480444394602.5+
chr216306278216306298916306278485171.3+
chr647635735476359364763573580696.7+
chr1963406216340822634062117542.8+
Download the Full Peak List



Motif Analysis

Manual





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