DNA Damage Atlas


GSM6685233-iMacrophage_oxENDseq




Basic Information

Manual

Sample ID:   

SRR22057961


Source Project ID:   

GSE210314

Cell Type:   

iMacrophage


Organism:   

Mus musculus


Treatment:   

pyridine borane


Treatment Time:   

3hrs


Treatment Dose:   

1M


Genotype:   

TDG-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

day2


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 1.073234



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961142412338120211624.01-
chrUn_GL45638999711125510683641.419-
chr17677409196774187667741519224.484-
chr13116192758116193116116192970205.659-
chrX143482580143483617143483032152.782+
chr11646824296468290264682648146.155-
chr5146666478146667095146666701120.89-
chr1293576815935776699357714196.6762-
chr241896036418964014189626095.4332-
chr292093333920939399209377384.0574-
Download the Full Peak List



Motif Analysis

Manual





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