DNA Damage Atlas

GSM851662-RAD51_Hop2-KO_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR391620


Source Project ID:   

GSE34592

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

9R female x 13R male F1


Genotype:   

Hop2-/-


Layout:   

PAIRED


Instrument model:   

Illumina Genome Analyzer II


Technique:   

ChIP-seq (anti-RAD51)


Others:   

control: GSM851664-IgG_control_rep1


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr61405896181405933191405915549.68701-
chr185678070956784506567842497.50741-
chr95066425250667670506654047.14845+
chr118960997189613504896118606.41855-
chr61428603591428633971428620325.83482+
chr104190277541906633419055855.79506-
chr64934208749346183493447945.73126+
chr71401768341401802521401785705.65335+
chr161692045516924441169229765.60897-
chr41370852441370884471370869905.33481-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1323695827236965682369624836.8528/
chr729863929298648932986428016.0689/
chr959536258595366405953632215.8859/
chr1953550298535507125355034715.6224/
chr635237604352384043523807315.2709/
chr1591257911912583619125824315.2598/
chr614059013914059197714059137214.814/
chr313332943313333015913332949214.1878/
chr711548632311548678511548654714.1721/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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