DNA Damage Atlas

GSM851663-RAD51_Hop2-KO_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR391621 , SRR391622 , SRR391623 , SRR391624 , SRR391625 , SRR391626 , SRR391627


Source Project ID:   

GSE34592

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

13R female x 9R male F1


Genotype:   

Hop2-/-


Layout:   

PAIRED


Instrument model:   

Illumina Genome Analyzer II


Technique:   

ChIP-seq (anti-RAD51)


Others:   

control: GSM851665-IgG_control_rep2


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr61405901391405919771405915545.91984-
chr101194604711194612701194607555.54634+
chr51373072041373075921373074284.82859-
chr71401779571401786321401785704.69707+
chr64934454049344917493447944.58721+
chr118961183289612542896118604.28792-
chr95066467250665464506654043.9577+
chr194202209642023720420236293.70492-
chr27696556276966287769658393.52833+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1323695827236965682369624518.1602/
chr158189493681895691818954827.15802/
chr95953625859536640595364277.12085/
chr101083563281083574141083570276.76782/
chr191715607617156604171563406.75538/
chr131120980891120986681120983816.59593/
chr116019961460201942602002366.5774/
chr83900552039006258390058096.51738/
chr192938725529387871293874566.49218/
chr72986392929864893298642906.48442/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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