DNA Damage Atlas

GSM851669-DMC1_Hop2-KO_KE

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR391634


Source Project ID:   

GSE34592

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

9R female x 13R male F1


Genotype:   

Hop2-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM851671-IgG_control_KE


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr614058977614059293814059155435.5738-
chr950663535506671045066540431.2197+
chr1189610663896135648961186031.0926-
chr1856781023567845415678424930.7674-
chr714017765814018079014017857029.1382+
chr614286078214286317214286203228.8603+
chr1041903348419065854190558528.8487-
chr649342606493463374934479427.5888+
chr983859320838619738386025927.1993-
chr1748471304849961484891925.4891+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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