DNA Damage Atlas


OER203647-PEM-seq_CH12F3_WT_Bcr_rep1-CC052c




Basic Information

Manual

Sample ID:   

OER203647


Source Project ID:   

OEP001736

Cell Type:   

CH12F3


Organism:   

Mus musculus


Treatment:   

transfected with pX330-Cas9 or pX330-Cas9-mCherry expression vector


Treatment Dose:   

1.5ug per million cells


Genotype:   

WT


Harvested Time:   

72 h stimulation


Targeted break:   

Bcr sgRNA


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

PEM-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1140975167409753684097516729875.3+
chr1749832274983430498343029581-
chr186352233863524358635223324481.4+
chr1887946251879464558794625124241.4+
chr1211342416011342641211342517023841.6-
chr1031603836316040393160403919140.7-
chr1818729875187300791872987519046.8+
chr745911311459115164591131117230.8+
chr1712034469120346701203467015816.4-
chr1067113352671135546711335215738.1+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1211342419111342591911342517035782.6-
chr91213280781213282811213282815818.3-
chr107229718372297428722971832796.57+
Download the Full Merged Peak List




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