DNA Damage Atlas


OER203653-PEM-seq_CH12F3_Lig4-KO_c-Myc_rep1-CC055a




Basic Information

Manual

Sample ID:   

OER203653


Source Project ID:   

OEP001736

Cell Type:   

CH12F3


Organism:   

Mus musculus


Treatment:   

transfected with pX330-Cas9 or pX330-Cas9-mCherry expression vector


Treatment Dose:   

1.5ug per million cells


Genotype:   

Lig4-/-


Harvested Time:   

72 h stimulation


Targeted break:   

c-Myc sgRNA


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

PEM-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr73750407437504276375042755614.8-
chr51371905471371907701371905474768.17+
chr101227420491227428681227423544067.98-
chr121132589631132656631132599994052.19+
chr91198123081198126531198124513492.97+
chr36059572060595930605959303375.56-
chr31408169561408172061408172063119.02-
chr111123500221123502241123500222807.4+
chr11879920671879922701879920672793.57+
chr186972522969725432697254322793.57-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr101227421141227426251227423545516.12-
chr73750407537504276375042755262.03-
chr116577041165770612657704114040.16+
chr91198123081198126531198124514002.22+
chr52370675623707223237068392263.47+
chr172949107229492437294911172208.61-
chr11709441341709452871709443341339.78-
chr88497717584978484849775471281.32-
chr7820622018206240282062401992.249-
Download the Full Merged Peak List




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