DNA Damage Atlas


OER203662-PEM-seq_CH12F3_Lig4-KO_c-Myc_rep2-CC057a




Basic Information

Manual

Sample ID:   

OER203662


Source Project ID:   

OEP001736

Cell Type:   

CH12F3


Organism:   

Mus musculus


Treatment:   

transfected with pX330-Cas9 or pX330-Cas9-mCherry expression vector


Treatment Dose:   

1.5ug per million cells


Genotype:   

Lig4-/-


Harvested Time:   

72 h stimulation


Targeted break:   

c-Myc sgRNA


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

PEM-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr121134212621134276101134256978540.87+
chr73750407537504277375042755524.59-
chr91198123081198126531198124513773.8+
chr187739855177398753773987533222.68-
chr41192359951192361981192361983206.8-
chr188277878882779079827787883195.78+
chr21287068591287070631287068593191.08+
chr121128720011128722061128720013175.52+
chr191335837413358582133583743129.72+
chr115645832856458537564585373114.74-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr101227421141227426251227423495516.12-
chr73750407537504276375042755262.03-
chr91198123081198126531198124514002.22+
chrX1434830181434832411434830223056.66+
chr52370675623707223237068372263.47-
chr172949107229492437294914302208.61+
chr51371905521371907611371905611942.88+
chr11709441341709452871709447321339.78-
chr88497717584978484849779341281.32+
chr7820622018206240282062401992.249-
Download the Full Merged Peak List




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