DNA Damage Atlas

SRX10826034-Hela_UNGKO_PMX_inp_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14477827


Source Project ID:   

PRJNA728500

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

pemetrexed


Treatment Time:   

48hrs


Treatment Dose:   

20nM


Genotype:   

UNG-/-


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

Ucaps-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM147951575414986319.4-
chrM65534681518298.12-
chrM139751429214006284.32-
chrUn_gl00022614173145791432664.2614+
rDNA13526139401368763.0196+
chrUn_gl00022667867159684359.9543+
rDNA41683763249.8994+
chr9_gl000199_random91754921109199449.4924-
chrUn_gl00022436894043380540.2005+
rDNA28374287422837439.5919+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM148951532314986342.161-
chrM124130101518321.888-
chrUn_gl00022614224145211432669.8898+
rDNA13574138951368756.9253+
chrUn_gl00022668307105684347.7202+
chr9_gl000199_random91764920629199445.8935-
rDNA50175263244.5299+
rDNA31869321773209344.0238-
chrUn_gl00022437384043380543.8276+
rDNA23426237332344135.2156+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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