DNA Damage Atlas

SRX10826036-HEK293T_WT_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14477825


Source Project ID:   

PRJNA728500

Cell Type:   

293T


Organism:   

Homo sapiens


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

Ucaps-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM1295415028135091039.05+
chrM8411871385821013.79-
chrM628766526571864.94-
chrM152691597715503759.153+
chrM320539723896618.277-
chrM4261073638480.485+
chrM129826032218391.232+
rDNA282952876628466121.753+
rDNA23367237552350477.4774+
rDNA31789324633180559.4683+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM1332614933135091012.4+
chrM841187138582956.343-
chrM152771582615503733.938+
chrM328339013896551.252-
chrM426855638443.751+
chrM210525232218436.857+
rDNA282952876628466126.853+
rDNA31789322813180587.2275+
rDNA23367237552350485.9468+
rDNA41985423454208373.6029+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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