DNA Damage Atlas

SRX10827269-MM_Bcell_AK_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14479078


Source Project ID:   

PRJNA728500

Cell Type:   

CH12F3


Organism:   

Mus musculus


Genotype:   

AID-/-


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

Ucaps-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr88375673383757075837569852766.56-
chrM128121425713055187.824-
chrM147311519314939170.363+
chrM386349984639158.558-
chrM124081267912497140.21+
chr12120028657120028996120028659138.567+
chrM115661199811622134.35+
chr11310166531025493102090127.059-
chr11310113131015503101501102.643-
chrM28483098301396.8711-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr88375676083757043837569853708.59-
chrM128221425713055211.625-
chrM386349984639177.551-
chrM147381516014939176.337+
chr12120028657120028963120028659161.912+
chrM115661199811622147.79+
chr11310166631025493102090137.606-
chr11310114731015483101501115.051-
chr930240063024267302403996.2802+
rDNA16256166431655567.2931-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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