DNA Damage Atlas


SRX11609399-CSA2_KO_rep2




Basic Information

Manual

Sample ID:   

SRR15304691


Source Project ID:   

PRJNA750873

Cell Type:   

seedlings


Organism:   

Arabidopsis thaliana


Treatment:   

UVC


Treatment Dose:   

120J/m2


Genotype:   

CSA2 KO


Harvested Time:   

10-days old seedlings


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

XR-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
2952910382996170.3291/
313591399135925441359188562.7136/
521316864213212852131907650.2894/
314196358141969581419655643.3267/
399893749991830999025342.1907/
231583742354140.7783/
414981050149837541498268740.5397/
213529605135322841353159140.4431/
516131297161350791613351039.8477/
318439689184424861844072039.7118/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
313591402135923891359188572.7529/
2953610366996172.278/
521316935213212822131907651.1037/
231583626354150.8857/
157457857501357496446.3878/
314196359141969331419655645.2892/
516131517161344611613351045.077/
414981063149833771498268744.7798/
111690619116914931169110443.6796/
458486915849825584929143.604/
Download the Full Merged Peak List



Motif Analysis

Manual





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