DNA Damage Atlas

SRX11609404-CSA1_KO_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR15304687


Source Project ID:   

PRJNA750873

Cell Type:   

seedlings


Organism:   

Arabidopsis thaliana


Treatment:   

UVC


Treatment Dose:   

120J/m2


Genotype:   

CSA1 KO


Harvested Time:   

10-days old seedlings


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
29524105469964141.763/
313591175135925481359185794.9802/
314196357141971191419661885.8488/
225873742354181.8239/
313586698135878001358722777.6468/
314195437141962481419588674.5378/
314201297142025521420163867.5023/
511730622117329531173172855.8233/
115082758150842191508366647.8834/
439506403951668395144147.2086/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
29525103919964167.136/
3135913481359239513591857124.554/
2319337423541100.288/
314201297142019031420163887.1081/
511730913117321101173172887.0142/
314196357141971191419661885.8488/
313586698135877901358722778.3579/
314195437141962411419588675.1868/
511724153117248081172446862.3935/
115082995150841501508366657.0065/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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