DNA Damage Atlas

SRX13589840-cgGG-gh2ax-30m-rep1

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR17418210


Source Project ID:   

PRJNA733683

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

light-activation of cgRNA GG multi-target Cas9


Treatment Time:   

30mins


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq ( anti-γH2AX )


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr73128436631284389/9.34396/
chr147311214973112172/6.2293/
chr182780224927802272/6.2293/
chr184462336444623387/6.2293/
chr2128427165128427188/6.2293/
chr11119030070119030093/3.11465/
chr11119202398119202421/3.11465/
chr11736076217360785/3.11465/
chr119991873699918759/3.11465/
chr12117751220117751243/3.11465/
Download the Full Peak List


Visualization

Manual





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