DNA Damage Atlas

SRX13589866-TA-53bp1-3h-rep1

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR17418184


Source Project ID:   

PRJNA733683

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

TA multi-target


Treatment Time:   

3hrs


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq ( anti-53BP1 )


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1173693817173693840/16.3531/
chr11196370811963731/12.2649/
chr5128740057128740080/12.2649/
chr11108453065108453088/8.17657/
chr2137166979137167002/8.17657/
chr61050392410503947/8.17657/
chr9132582994132583017/8.17657/
chr10103564914103564937/4.08829/
chr1073239277323950/4.08829/
chr11125332769125332792/4.08829/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1173693817173693840/16.2185/
chr11196370811963731/12.1639/
chr5128740057128740080/12.1639/
chr11108453065108453088/10.1197/
chr2137166979137167002/8.10923/
chr61050392410503947/8.10923/
chr9132582994132583017/8.10923/
chr2128231392128231415/6.06509/
chr10103564914103564937/4.05462/
chr1073239277323950/4.05462/
Download the Full Merged Peak List


Visualization

Manual





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