DNA Damage Atlas

SRX14113747-HeLa-S3_cells_ATL-XR_CPD_UV_1h_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17957012


Source Project ID:   

PRJNA804872

Cell Type:   

HeLa-S3


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

10s


Treatment Dose:   

2J/m2


Harvested Time:   

repair time: 1h


Layout:   

SINGLE


Instrument model:   

Illumina NovaSeq 6000


Technique:   

ATL-XR-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr156813119868134009681325653.81764/
chr31896536541896567041896559503.28117/
chr31942478031942484591942479803.2142/
chrUn_gl0002205194853766528083.18512/
chr53219341832194469321941123.14404/
chr9_gl000199_random9852598993988243.09324/
chr114796792847969345479688873.04265/
chr176199360061995028619940992.99717/
chr114793917847940419479396322.99234/
rDNA1342814644143062.97622/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr176199390061994369619940995.23387/
chr115246189524721552467374.969/
chr156813151068133737681325654.53614/
chr31896549791896567041896559503.92239/
rDNA1373414643143063.63519/
chr31942478031942483861942479803.61666/
chr51323612581323621101323616093.36127/
chr114796809647969333479688873.33275/
chr91308401981308417981308412493.32405/
chr11683745991683755451683752113.26014/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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