DNA Damage Atlas

SRX14113748-HeLa-S3_cells_ATL-XR_CPD_UV_1h_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17957011


Source Project ID:   

PRJNA804872

Cell Type:   

HeLa-S3


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

10s


Treatment Dose:   

2J/m2


Harvested Time:   

repair time: 1h


Layout:   

SINGLE


Instrument model:   

Illumina NovaSeq 6000


Technique:   

ATL-XR-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM143371986.98398/
chr114795928247960590479599964.22017/
rDNA1373414643142944.02947/
chr112741622427418173274177243.97039/
chr31896549791896568771896560133.96835/
chr114721047347211419472109403.87187/
chr114796809647969333479689423.83683/
chr12051416852051422802051420543.72825/
chr12450597542450603582450600733.58729/
chr91251642071251653901251649733.57588/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr31896549791896567041896560134.30653/
chr114795928747960590479599964.23636/
rDNA1373414643142944.02947/
chr114796809647969333479689423.83683/
chr91308401981308417981308412453.70793/
chr12450597542450603582450600733.58729/
chr91251642071251653901251649733.57588/
chr11650372165114816506613.52345/
chr19_gl000208_random246572783.50444/
chr112914055029142398291418383.48949/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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