DNA Damage Atlas

SRX15924192-nDNA_2uM_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19880821


Source Project ID:   

PRJNA853537

Cell Type:   

BEAS-2B


Organism:   

Homo sapiens


Treatment:   

BPDE


Treatment Time:   

24hrs


Treatment Dose:   

2uM


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

Damage-seq


Others:   

genomic DNA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022826336280152717635.5288-
chrUn_gl00022416357196461865917.5542+
chrUn_gl00022410602145761110613.2231+
chrUn_gl0002263971888965819.01877+
chrUn_gl0002141162571219271201347.77623-
chr81449400681449412141449403557.44552+
chr4_gl000193_random8940492154913667.02561-
chr163235892232360952323607026.02711-
chr91397154871397172371397162474.94019+
chr206140985261410788614103814.9395-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022826491280152717636.0294-
chrUn_gl00022416399193731865920.191+
chrUn_gl00022410609145761110613.6743+
chr814494016814494102414494035511.6634+
chrUn_gl0002141163781216291201349.09613-
chrUn_gl0002263996881265819.09358+
chr177745859777460274774595146.38753-
chr163268630132688075326870735.95787+
chr163235892232360781323607025.91923-
chr152389227523893009238922765.26701+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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