DNA Damage Atlas

SRX15924194-nDNA_2uM_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19880819


Source Project ID:   

PRJNA853537

Cell Type:   

BEAS-2B


Organism:   

Homo sapiens


Treatment:   

BPDE


Treatment Time:   

24hrs


Treatment Dose:   

2uM


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

Damage-seq


Others:   

genomic DNA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022826491280662717640.4105-
chrUn_gl00022416326194571865919.1453+
chrUn_gl00022410581145961110613.3778+
chr84231707842325781423175129.6078+
chrUn_gl0002141163781219381201349.09691-
chrUn_gl0002263899881265819.00931+
chr81449398631449418011449403556.87256+
chr193679930636800435368004355.1047-
chr177745850177461165774595145.06881-
chr163235850832361076323607024.86686-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022826491280152717636.0294-
chrUn_gl00022416399193731865920.191+
chrUn_gl00022410609145761110613.6743+
chr814494016814494102414494035511.6634+
chrUn_gl0002141163781216291201349.09613-
chrUn_gl0002263996881265819.09358+
chr177745859777460274774595146.38753-
chr163268630132688075326870735.95787+
chr163235892232360781323607025.91923-
chr152389227523893009238922765.26701+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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