DNA Damage Atlas

SRX15924197-Cell_025uM_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19880816


Source Project ID:   

PRJNA853537

Cell Type:   

BEAS-2B


Organism:   

Homo sapiens


Treatment:   

BPDE


Treatment Time:   

24hrs


Treatment Dose:   

0.25uM


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

Damage-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr211282739112828641128283634.1029-
chrUn_gl00022662968116724833.7509+
chr1013410732913410754113410751531.6978-
chrUn_gl00022826624277192700131.4416+
chr139546665395468313954679030.3165-
chr2059566230595663375956632729.3265-
chr512948861295177129499528.4842-
chr842318525423215164231984327.1882+
chr1474610982746110937461098326.9362+
chr985956884859569958595698525.0694-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022826624277192700143.0428+
chr842318525423215164231984324.3409+
chrUn_gl00022417041192921891318.5091+
chr842321521423221424232203117.9965-
chr9_gl000199_random60655613226089112.0829-
chr9_gl000199_random84036847568456911.1502-
chr9_gl000199_random91249929109207410.7477-
chr53920653926153922108.7586+
chrUn_gl0002146431865346643188.42117+
chr9_gl000199_random1557021563791558287.62337+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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