DNA Damage Atlas

SRX15924202-Cell_1uM_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19880811


Source Project ID:   

PRJNA853537

Cell Type:   

BEAS-2B


Organism:   

Homo sapiens


Treatment:   

BPDE


Treatment Time:   

24hrs


Treatment Dose:   

1uM


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

Damage-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022826530276522717674.505-
chr915422380154227811542276935.7932-
chr765338197653386496533824131.269+
chr913243805613243845013243807631.0817+
chr1632686686326880033268707328.2289+
chr1013399950413400037413399953525.6548+
chrUn_gl00022416559197251865823.333+
chr1170507612705079877050768820.425+
chr514995496114995559314995526019.7936-
chr2250453706504543105045400519.6211-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022826625276522717684.7105-
chr915422550154227811542276943.1954-
chrUn_gl00022416559193171865822.2223+
chr842318460423207854231972217.2124-
chr1936799556368004343680007014.4035-
chr9_gl000199_random60461615456073310.4743+
chrUn_gl0002146412765933643187.01807+
chr71581445591581448431581448426.02246-
chr9_gl000199_random8398584887845395.5827-
chr51800852021800860671800856374.31135-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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