DNA Damage Atlas

SRX1865404-END-seq-preB-LIG4

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3703225


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001637


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr119245381319245428119245407214249.6+
chr510617662510617701810617677620230.9+
chr1210552460910552499410552476114484.5+
chr995425764954264599542592610508.4+
chr1693789040937895409378919815315.9+
chr883756604837571398375693610567.7+
chr1353269758532701525326993414395.6+
chr1241514963415153474151512514223+
chr219509173195095671950933111351.8+
chr1657090005709582570916213605.3+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrY40364754036905403665712866.8+
chr510617662510617701810617677612672.5+
chr995425764954261829542592612598.9+
chr1657090045709405570916212448.3+
chr119245388919245428019245407212165.2+
chr1490911043909114319091118912014.5+
chr1693789040937895409378919810964.9+
chr1210552460910552499110552476110505.2+
chr1353269758532701525326993410314.3+
chr1241514963415153474151512510206.3+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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