DNA Damage Atlas

SRX1865441-END-seq-preB-LIG4-ATMi-rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3703374


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Treatment:   

ATM inhibitor


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001724


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1311619274511619314411619291616464.1+
chr911535057411535110511535084410150.9+
chr1210552458510552498010552474312292+
chr1693789048937895409378921013946.7+
chr593289489932898679328964610653.9+
chr58050072180501125805008959934.3+
chr1353269747532701525326992212213.1+
chr1241514969415153494151513712581.5+
chr21950916919509567195093379921.75+
chrY40364754036905403662715956.8+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1311619274511619314211619291612564.5+
chrY40364764036905403662712094.4+
chr119245390419245427919245407812038.6+
chr995425753954261829542592611436.3+
chr1490911031909114319091121310709.4+
chr1693789048937895409378921010531.5+
chr91153506801153510981153508449881.67+
chr184801023348010677480104209722.87+
chr135326975253270146532699229642.53+
chr124151496941515349415151379563.02+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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