DNA Damage Atlas

SRX1865442-END-seq-preB-LIG4-ATMi-rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3703375


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Treatment:   

ATM inhibitor


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004061


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11924539041924542791924540788333.8+
chr131161927391161931421161929228454.24+
chr91153506801153510981153508266868.33+
chr51061766481061770181061767767376.42+
chr99542575395426182954259268043.44+
chr169378904293789669937892105584.1+
chr149091087490911431909112255240.65+
chr135326975253270146532699226730.97+
chr165709016570941057091626894.54+
chrY4036476403690540366278194.89+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1311619274511619314211619292212564.5+
chrY40364764036905403662712094.4+
chr119245390419245427919245407812038.6+
chr995425753954261829542592611436.3+
chr1490911031909114319091122510709.4+
chr1693789048937895409378921010531.5+
chr91153506801153510981153508269881.67+
chr184801023348010677480104209722.87+
chr135326975253270146532699229642.53+
chr124151496941515349415151379563.02+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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