DNA Damage Atlas

SRX1865443-END-seq-preB-LIG4-53BP1-rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3703376


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

Lig4-/- 53BP1-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.008133


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11924538151924542791924540425941.73+
chr131161927421161934731161929284218.9+
chr51061766241061770181061767768413+
chr121055244851055249811055247494766.33+
chr99542575395426182954259267491.9+
chr109487199694872372948721604157.78+
chr149091102790911551909112195166.71+
chr146916183769162604691620434248.72+
chr124151496341515349415151375831.25+
chrY4036475403690540366277452.92+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr131161927421161931421161929289483.34+
chr99542575395426182954259269096.7+
chrY4036475403690540366279009.11+
chr51061766241061770181061767767830.93+
chr165709006570940557091627771.53+
chr135326975153270147532699107283.96+
chr11924538151924542791924540427283.89+
chr124151496341515349415151377217.3+
chr169378903493789587937892106962.59+
chr149091102790911551909112196374.25+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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