DNA Damage Atlas

SRX1865444-END-seq-preB-LIG4-53BP1-rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3703415


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

Lig4-/- 53BP1-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.006792


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1311619274011619314211619293411200.8+
chr141125187421125191211125188945874.94+
chr99542565995426187954259268695.2+
chr109487200494872372948721546093.61+
chr169378903493789696937891926901.55+
chr88375665383757149837569247031.33+
chr135326975153270147532699108572.06+
chr184801026848010842480104146899+
chr124151495841515349415151258493.33+
chr21950917319509567195093377113.29+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr131161927421161931421161929349483.34+
chr99542575395426182954259269096.7+
chrY4036475403690540366399009.11+
chr51061766241061770181061767827830.93+
chr165709006570940557091867771.53+
chr135326975153270147532699107283.96+
chr11924538151924542791924540787283.89+
chr124151496341515349415151257217.3+
chr169378903493789587937891926962.59+
chr149091102790911551909112196374.25+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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