DNA Damage Atlas

SRX1865445-END-seq-preB-LIG4-53BP1-ATMi-rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3703416


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Treatment:   

ATM inhibitor


Genotype:   

Lig4-/- 53BP1-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00873


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11924538741924542811924540604538.2+
chr51061766231061770181061767765653.06+
chr121055245811055250431055247613378.49+
chr99542551395426187954259263135.49+
chr169378903793789619937892103600.86+
chr59328948893289866932896403401.41+
chr149091103390911482909112133956.94+
chr58050070980501125805009133119.44+
chr165708958570940557091624945.34+
chrY4036405403710140366393020.15+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrY4036475403690540366398107.93+
chr51061766241061770121061767767837.31+
chr165709010570940557091627629.53+
chr11924538741924542811924540607603.5+
chr121055245991055249811055247616783.83+
chr149091104390911482909112136775.04+
chr135326975253270146532699226663.36+
chr124151496341515345415151316533.64+
chr131161927461161932761161929046290.95+
chr169378904793789619937892106101.64+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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