DNA Damage Atlas

SRX1865446-END-seq-preB-LIG4-53BP1-ATMi-rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3703417


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Treatment:   

ATM inhibitor


Genotype:   

Lig4-/- 53BP1-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00473


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr131161927461161932761161929408819.38+
chr51061766241061770121061767769919.57+
chr121055245991055249811055247439481.77+
chr99542551495426182954259267183.13+
chr149091104390911560909112138069.28+
chr146916184269162604691620376727.35+
chr135326975253270146532699229417.64+
chr124151496341515345415151319163.96+
chr165709010570940557091629663.6+
chrY40364754036905403666311327.5+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrY4036475403690540366638107.93+
chr51061766241061770121061767767837.31+
chr165709010570940557091627629.53+
chr11924538741924542811924540427603.5+
chr121055245991055249811055247436783.83+
chr149091104390911482909112136775.04+
chr135326975253270146532699226663.36+
chr124151496341515345415151316533.64+
chr131161927461161932761161929406290.95+
chr169378904793789619937892046101.64+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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