DNA Damage Atlas


SRX1867517-END-seq-preB-LIG4-G1-AsiSI-ENDseq-vs-BLESS




Basic Information

Manual

Sample ID:   

SRR3705489


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

Lig4-/- 53BP1-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001416



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr57329285273292855/5533950/
chr9121477512121477515/5155950/
chr137570811275708115/5128300/
chr195352894153528944/4807210/
chr159939343499393437/4387490/
chr4139192791139192794/4370540/
chr2156144262156144265/4130410/
chr115335176253351765/3597720/
chr3139074689139074692/3435420/
chr1184732391184732394/3360130/
Download the Full Peak List




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