DNA Damage Atlas

SRX1867518-END-seq-preB-RAG1-rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705488


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

RAG1-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.008178


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11924537251924543141924540665038.39+
chr131161927401161932201161929226862.77+
chr91153506751153511111153508506488.78+
chr99542575395426557954259264298.54+
chr169378903993789849937891924228.31+
chr149091086890911431909112195089.86+
chr135326974853270152532699166217.14+
chr184801016248010680480104205571.23+
chr124151496341515497415151434530.77+
chrY4036475403722240366694623.95+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr131161927401161932201161929224405.66+
chr149091100990911431909112194346.99+
chr91153506751153511111153508504156.61+
chr121055245811055249801055247554092.68+
chr135326975253270152532699164027.38+
chr124151496341515351415151433998.15+
chr99542575395426319954259263910.6+
chr184801016248010680480104203576.02+
chr11924537251924543141924540663216.96+
chr169378903993789760937891923045.36+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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