DNA Damage Atlas

SRX1867521-END-seq-preB-WT-G1-AsiSI

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR3705515


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.008408


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr159939343499393437/1073470/
chr9121477512121477515/920867/
chr12111039091111039094/905676/
chr1125435718125435721/841856/
chr4139192791139192794/809305/
chr1143739618143739621/786494/
chr57329285273292855/767458/
chr195352894153528944/692568/
chr2156144262156144265/598494/
chr8106210920106210923/593910/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr131161927441161931421161929166945.02+
chrY4036480403690540366696908.5+
chr11924538901924542831924540426240.93+
chr121055245851055249811055247435353.24+
chr135326974853270146532699405352.4+
chr124151496441515349415151435253.47+
chr59328948893289866932896524606.57+
chr21950917119509566195093254327.74+
chr58050071480501125805009014230.71+
chr149091092590911510909112074125.31+
Download the Full Merged Peak List


Visualization

Manual





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