DNA Damage Atlas

SRX1867522-END-seq-preB-RAG1-ATMi-rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705514


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Treatment:   

ATM inhibitor


Genotype:   

RAG1-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.014046


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11924537791924542831924540423037.55+
chr141192867921192871651192869512456.39+
chr131161927421161931461161929164179+
chr121055245811055251181055247432425.97+
chr169378888393789589937892102516.28+
chr149091092490911510909112072602.38+
chr58050071480501145805009012519.16+
chr135326963053270146532699402508.99+
chr124151496441515349415151433254.08+
chrY4036475403690540366694225.33+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr131161927441161931421161929226945.02+
chrY4036480403690540366576908.5+
chr11924538901924542831924540546240.93+
chr121055245851055249811055247735353.24+
chr135326974853270146532699105352.4+
chr124151496441515349415151315253.47+
chr59328948893289866932896404606.57+
chr21950917119509566195093434327.74+
chr58050071480501125805008954230.71+
chr149091092590911510909112014125.31+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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