DNA Damage Atlas

SRX1867523-END-seq-preB-RAG1-ATMi-rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705516


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Treatment:   

ATM inhibitor


Genotype:   

RAG1-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005525


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11924538901924544391924540546146.99+
chr131161927441161931421161929229648.03+
chr121055245851055249811055247737416.73+
chr101026684881026688631026686335168.52+
chr99542575795426557954259265048.82+
chr59328948893289866932896406382.46+
chr88375658683757141837569365274.82+
chr135326974853270152532699107341.33+
chr21950916919509566195093435926.7+
chrY4036480403724440366575308.09+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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